STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH53421.1Signal transduction histidine kinase. (465 aa)    
Predicted Functional Partners:
SFH53395.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.985
SFH58864.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.937
SFH58039.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.936
SFH83036.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.934
SFH54869.1
Hypothetical protein.
  
 0.919
SFI20222.1
PAS domain S-box-containing protein.
 
 0.858
SFH77962.1
Hypothetical protein.
 
 0.812
SFH68582.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.787
SFH58844.1
Hypothetical protein.
  
 0.784
SFH66532.1
PAS domain S-box-containing protein.
  
 0.780
Your Current Organism:
Tindallia magadiensis
NCBI taxonomy Id: 69895
Other names: DSM 10318, T. magadiensis, Tindallia magadii, strain Z-7934
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