STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH56541.1Putative ABC transport system ATP-binding protein. (219 aa)    
Predicted Functional Partners:
SFH56562.1
Putative ABC transport system permease protein.
    0.966
SFH69058.1
Putative ABC transport system permease protein.
  
 0.892
SFH79304.1
Lipoprotein-releasing system permease protein.
  
 0.892
SFH92968.1
Putative ABC transport system permease protein.
  
 0.892
SFH93668.1
ABC-type transport system, involved in lipoprotein release, permease component.
  
 0.892
SFH54022.1
ATP-binding cassette, subfamily B/ATP-binding cassette, subfamily B, MsbA.
   
0.884
SFH80059.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.820
SFH94681.1
RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.820
SFI16194.1
Hypothetical protein.
  
 0.820
SFH82940.1
Outer membrane lipoprotein-sorting protein.
   
 
 0.733
Your Current Organism:
Tindallia magadiensis
NCBI taxonomy Id: 69895
Other names: DSM 10318, T. magadiensis, Tindallia magadii, strain Z-7934
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.