Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFH59728.1 | SFH71476.1 | SAMN05192551_101711 | SAMN05192551_102303 | Protein of unknown function. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.855 |
SFH68582.1 | SFH71476.1 | SAMN05192551_102161 | SAMN05192551_102303 | Two-component system, chemotaxis family, CheB/CheR fusion protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.706 |
SFH68582.1 | rpoB | SAMN05192551_102161 | SAMN05192551_1189 | Two-component system, chemotaxis family, CheB/CheR fusion protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.427 |
SFH71399.1 | SFH71455.1 | SAMN05192551_102300 | SAMN05192551_102302 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | [SSU ribosomal protein S18P]-alanine acetyltransferase. | 0.955 |
SFH71399.1 | SFH71476.1 | SAMN05192551_102300 | SAMN05192551_102303 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.696 |
SFH71399.1 | SFH71500.1 | SAMN05192551_102300 | SAMN05192551_102304 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | Hypothetical protein. | 0.634 |
SFH71399.1 | SFH71522.1 | SAMN05192551_102300 | SAMN05192551_102305 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | Hypothetical protein. | 0.727 |
SFH71399.1 | tsaD | SAMN05192551_102300 | SAMN05192551_102306 | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.996 |
SFH71455.1 | SFH71399.1 | SAMN05192551_102302 | SAMN05192551_102300 | [SSU ribosomal protein S18P]-alanine acetyltransferase. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.955 |
SFH71455.1 | SFH71476.1 | SAMN05192551_102302 | SAMN05192551_102303 | [SSU ribosomal protein S18P]-alanine acetyltransferase. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.662 |
SFH71455.1 | SFH71500.1 | SAMN05192551_102302 | SAMN05192551_102304 | [SSU ribosomal protein S18P]-alanine acetyltransferase. | Hypothetical protein. | 0.634 |
SFH71455.1 | SFH71522.1 | SAMN05192551_102302 | SAMN05192551_102305 | [SSU ribosomal protein S18P]-alanine acetyltransferase. | Hypothetical protein. | 0.725 |
SFH71455.1 | tsaD | SAMN05192551_102302 | SAMN05192551_102306 | [SSU ribosomal protein S18P]-alanine acetyltransferase. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.910 |
SFH71476.1 | SFH59728.1 | SAMN05192551_102303 | SAMN05192551_101711 | RNA polymerase sigma-70 factor, ECF subfamily. | Protein of unknown function. | 0.855 |
SFH71476.1 | SFH68582.1 | SAMN05192551_102303 | SAMN05192551_102161 | RNA polymerase sigma-70 factor, ECF subfamily. | Two-component system, chemotaxis family, CheB/CheR fusion protein. | 0.706 |
SFH71476.1 | SFH71399.1 | SAMN05192551_102303 | SAMN05192551_102300 | RNA polymerase sigma-70 factor, ECF subfamily. | tRNA threonylcarbamoyladenosine biosynthesis protein TsaE. | 0.696 |
SFH71476.1 | SFH71455.1 | SAMN05192551_102303 | SAMN05192551_102302 | RNA polymerase sigma-70 factor, ECF subfamily. | [SSU ribosomal protein S18P]-alanine acetyltransferase. | 0.662 |
SFH71476.1 | SFH71500.1 | SAMN05192551_102303 | SAMN05192551_102304 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.773 |
SFH71476.1 | SFH71522.1 | SAMN05192551_102303 | SAMN05192551_102305 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.813 |
SFH71476.1 | rpoA | SAMN05192551_102303 | SAMN05192551_11331 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.770 |
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