STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH87677.1ADP-ribose pyrophosphatase YjhB, NUDIX family. (169 aa)    
Predicted Functional Partners:
SFI06347.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
  0.784
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.773
SFH87697.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
       0.773
SFH53597.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 
 0.743
SFH60153.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.724
ribBA
GTP cyclohydrolase II /3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.715
glnS
glutaminyl-tRNA synthetase.
  
    0.702
SFI11257.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 
  0.671
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.608
SFH87619.1
Nitroreductase; Belongs to the flavin oxidoreductase frp family.
    
  0.566
Your Current Organism:
Tindallia magadiensis
NCBI taxonomy Id: 69895
Other names: DSM 10318, T. magadiensis, Tindallia magadii, strain Z-7934
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