STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI20277.1Sugar phosphate permease. (426 aa)    
Predicted Functional Partners:
SFI20222.1
PAS domain S-box-containing protein.
     
 0.589
SFI20300.1
Hypothetical protein.
       0.584
SFI13849.1
iron(III) transport system substrate-binding protein.
  
  
 0.563
SFI33077.1
iron(III) transport system substrate-binding protein.
  
  
 0.563
SFI20246.1
PAS domain S-box-containing protein.
     
 0.546
SFH98715.1
AraC-type DNA-binding protein.
  
  
 0.518
SFH56122.1
Fucose permease.
  
  
 0.442
SFH92656.1
Predicted arabinose efflux permease, MFS family.
  
 
 0.435
SFI16514.1
MFS transporter, PPP family, 3-phenylpropionic acid transporter.
  
 
 0.435
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.425
Your Current Organism:
Tindallia magadiensis
NCBI taxonomy Id: 69895
Other names: DSM 10318, T. magadiensis, Tindallia magadii, strain Z-7934
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.