STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI27460.1Protoporphyrinogen oxidase. (417 aa)    
Predicted Functional Partners:
SFI27493.1
Transposase.
 
     0.934
SFH78225.1
GTPase, G3E family; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.869
SFH90488.1
Uroporphyrinogen III methyltransferase / synthase.
  
 
 0.864
SFH78301.1
[methyl-Co(III) methanol-specific corrinoid protein]:coenzyme M methyltransferase; Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.795
SFH78248.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.764
SFH78351.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
 
 0.764
SFI15461.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
  
     0.757
SFH47871.1
LPXTG-motif cell wall anchor domain-containing protein/TQXA domain-containing protein.
  
     0.756
SFH98688.1
Hypothetical protein.
  
     0.755
SFH80586.1
Hypothetical protein.
  
     0.747
Your Current Organism:
Tindallia magadiensis
NCBI taxonomy Id: 69895
Other names: DSM 10318, T. magadiensis, Tindallia magadii, strain Z-7934
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