Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFD94139.1Lipoprotein, YaeC family; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; Belongs to the nlpA lipoprotein family. (268 aa)    
Predicted Functional Partners:
EFD93819.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.997
metN
Putative D-methionine ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
 0.987
EFD93630.1
Lipoprotein, YaeC family; Identified by match to protein family HMM PF03180; match to protein family HMM TIGR00363; Belongs to the nlpA lipoprotein family.
     
  0.746
EFD94175.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
 0.636
EFD93505.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
   
 
  0.632
EFD94174.1
ABC 3 transport family protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032.
    
  0.620
EFD93384.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02463.
   
 
 0.563
EFD94231.1
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; Identified by match to protein family HMM PF01041; match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01326.
  
    0.537
EFD93617.1
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
   
 
  0.534
EFD93506.1
Permease, YjgP/YjgQ family; Identified by match to protein family HMM PF03739.
     
  0.533
Your Current Organism:
Megasphaera genomosp.
NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L
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