Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFD94172.1Transcriptional regulator, ArsR family; Identified by match to protein family HMM PF01022. (119 aa)    
Predicted Functional Partners:
EFD94171.1
Putative phosphohistidine phosphatase SixA; Identified by match to protein family HMM PF00300.
       0.746
thiD
Phosphomethylpyrimidine kinase; Identified by match to protein family HMM PF08543; match to protein family HMM TIGR00097.
  
    0.726
cadA
Cadmium-exporting ATPase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain one or more premature stops and/or frameshifts; identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
  
 0.692
cadA-2
Cadmium-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01512; match to protein family HMM TIGR01525.
 
  
 0.658
EFD94265.1
Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.
  
  
 0.647
EFD94169.1
Hypothetical protein; Identified by glimmer; putative.
       0.628
EFD93684.1
Putative permease; Identified by match to protein family HMM PF03773.
  
  
 0.574
EFD94173.1
Transcriptional regulator, Fur family; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
  
 0.559
EFD94175.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
  
 0.551
EFD94174.1
ABC 3 transport family protein; Identified by match to protein family HMM PF00950; match to protein family HMM PF01032.
     
 0.543
Your Current Organism:
Megasphaera genomosp.
NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L
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