EFD94177.1 protein (Megasphaera genomosp.) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EFD94177.1

N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510. (194 aa)

Predicted Functional Partners:

EFD93924.1

0.864

spoIIIE

0.821

acpP

0.777

EFD94769.1

0.777

EFD94346.1

0.724

EFD93470.1

0.687

EFD93449.1

0.687

EFD94839.1

0.687

EFD93878.1

0.599

EFD93700.1

0.599

Your Current Organism:

Megasphaera genomosp.

NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFD93449.1	EFD93924.1	HMPREF0889_0497	HMPREF0889_0321	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	Identified by match to protein family HMM PF00395.	0.473
EFD93449.1	EFD94177.1	HMPREF0889_0497	HMPREF0889_0179	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.687
EFD93470.1	EFD93924.1	HMPREF0889_0138	HMPREF0889_0321	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.	Identified by match to protein family HMM PF00395.	0.580
EFD93470.1	EFD94177.1	HMPREF0889_0138	HMPREF0889_0179	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.687
EFD93470.1	EFD94839.1	HMPREF0889_0138	HMPREF0889_1690	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.	Hemagglutinin; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05662.	0.762
EFD93700.1	EFD94177.1	HMPREF0889_1054	HMPREF0889_0179	Peptidase, S41 family; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.599
EFD93878.1	EFD94177.1	HMPREF0889_0275	HMPREF0889_0179	Hypothetical protein; Identified by glimmer; putative.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.599
EFD93924.1	EFD93449.1	HMPREF0889_0321	HMPREF0889_0497	Identified by match to protein family HMM PF00395.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	0.473
EFD93924.1	EFD93470.1	HMPREF0889_0321	HMPREF0889_0138	Identified by match to protein family HMM PF00395.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.	0.580
EFD93924.1	EFD94177.1	HMPREF0889_0321	HMPREF0889_0179	Identified by match to protein family HMM PF00395.	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	0.864
EFD93924.1	EFD94346.1	HMPREF0889_0321	HMPREF0889_1526	Identified by match to protein family HMM PF00395.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	0.646
EFD93924.1	EFD94839.1	HMPREF0889_0321	HMPREF0889_1690	Identified by match to protein family HMM PF00395.	Hemagglutinin; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05662.	0.708
EFD93924.1	spoIIIE	HMPREF0889_0321	HMPREF0889_0369	Identified by match to protein family HMM PF00395.	Identified by match to protein family HMM PF01580; match to protein family HMM PF09397.	0.550
EFD94177.1	EFD93449.1	HMPREF0889_0179	HMPREF0889_0497	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	0.687
EFD94177.1	EFD93470.1	HMPREF0889_0179	HMPREF0889_0138	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.	0.687
EFD94177.1	EFD93700.1	HMPREF0889_0179	HMPREF0889_1054	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Peptidase, S41 family; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family.	0.599
EFD94177.1	EFD93878.1	HMPREF0889_0179	HMPREF0889_0275	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Hypothetical protein; Identified by glimmer; putative.	0.599
EFD94177.1	EFD93924.1	HMPREF0889_0179	HMPREF0889_0321	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Identified by match to protein family HMM PF00395.	0.864
EFD94177.1	EFD94346.1	HMPREF0889_0179	HMPREF0889_1526	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.	0.724
EFD94177.1	EFD94769.1	HMPREF0889_0179	HMPREF0889_1508	N-acetylmuramoyl-L-alanine amidase; Identified by match to protein family HMM PF01510.	Hypothetical protein.	0.777