Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFD93844.1C4-dicarboxylate transporter/malic acid transport protein; Identified by match to protein family HMM PF03595. (335 aa)    
Predicted Functional Partners:
EFD93628.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.745
EFD94364.1
Hep/Hag repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05658; match to protein family HMM PF05662.
  
     0.743
EFD93470.1
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.
  
     0.737
EFD93829.1
Identified by match to protein family HMM PF05656.
  
     0.714
tonB-9
Putative colicin I receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.704
EFD93478.1
Hep/Hag repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05658; match to protein family HMM PF05662.
  
     0.697
tonB-4
TonB-dependent receptor plug domain protein; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.684
EFD94138.1
Hep/Hag repeat protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by match to protein family HMM PF05658; match to protein family HMM PF05662.
  
     0.656
EFD94691.1
Hep/Hag repeat protein; Identified by match to protein family HMM PF05658.
  
     0.651
tonB-6
TonB-dependent receptor; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00593.
  
     0.636
Your Current Organism:
Megasphaera genomosp.
NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L
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