Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EFD93963.1Hypothetical protein; Identified by glimmer; putative. (348 aa)    
Predicted Functional Partners:
EFD93959.1
Hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
 
     0.880
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.831
cinA
Competence/damage-inducible domain protein CinA; Identified by match to protein family HMM PF00994; match to protein family HMM PF02464; match to protein family HMM TIGR00199; match to protein family HMM TIGR00200; Belongs to the CinA family.
       0.808
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.787
EFD94820.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.733
EFD93504.1
Identified by match to protein family HMM PF03968.
  
     0.733
EFD93973.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.714
EFD93970.1
Outer membrane protein; Identified by match to protein family HMM PF03938.
  
     0.705
EFD93977.1
Identified by match to protein family HMM PF04357.
  
     0.704
EFD94788.1
Hypothetical protein; Identified by glimmer; putative.
  
     0.694
Your Current Organism:
Megasphaera genomosp.
NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L
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