mreD protein (Megasphaera genomosp.) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Score

mreD

Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426. (170 aa)

Predicted Functional Partners:

mreC

0.960

EFD93314.1

0.896

EFD93310.1

0.869

mrdA

0.815

mrdB

0.800

EFD93316.1

0.562

EFD93309.1

0.433

EFD93308.1

0.407

Your Current Organism:

Megasphaera genomosp.

NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFD93308.1	EFD93309.1	HMPREF0889_0729	HMPREF0889_0730	Hypothetical protein; Identified by glimmer; putative.	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	0.718
EFD93308.1	EFD93310.1	HMPREF0889_0729	HMPREF0889_0731	Hypothetical protein; Identified by glimmer; putative.	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	0.407
EFD93308.1	mreC	HMPREF0889_0729	HMPREF0889_0732	Hypothetical protein; Identified by glimmer; putative.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.407
EFD93308.1	mreD	HMPREF0889_0729	HMPREF0889_0733	Hypothetical protein; Identified by glimmer; putative.	Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.	0.407
EFD93309.1	EFD93308.1	HMPREF0889_0730	HMPREF0889_0729	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	Hypothetical protein; Identified by glimmer; putative.	0.718
EFD93309.1	EFD93310.1	HMPREF0889_0730	HMPREF0889_0731	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	0.433
EFD93309.1	mrdA	HMPREF0889_0730	HMPREF0889_0734	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.	0.409
EFD93309.1	mreC	HMPREF0889_0730	HMPREF0889_0732	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.433
EFD93309.1	mreD	HMPREF0889_0730	HMPREF0889_0733	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.	0.433
EFD93310.1	EFD93308.1	HMPREF0889_0731	HMPREF0889_0729	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Hypothetical protein; Identified by glimmer; putative.	0.407
EFD93310.1	EFD93309.1	HMPREF0889_0731	HMPREF0889_0730	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Peptidase C1-like family; Identified by match to protein family HMM PF03051; Belongs to the peptidase C1 family.	0.433
EFD93310.1	EFD93314.1	HMPREF0889_0731	HMPREF0889_0735	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.	0.864
EFD93310.1	EFD93316.1	HMPREF0889_0731	HMPREF0889_0737	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	S1 RNA binding domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757.	0.559
EFD93310.1	mrdA	HMPREF0889_0731	HMPREF0889_0734	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.	0.959
EFD93310.1	mrdB	HMPREF0889_0731	HMPREF0889_0736	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.941
EFD93310.1	mreC	HMPREF0889_0731	HMPREF0889_0732	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.	0.991
EFD93310.1	mreD	HMPREF0889_0731	HMPREF0889_0733	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	Rod shape-determining protein MreD; Identified by match to protein family HMM TIGR03426.	0.869
EFD93314.1	EFD93310.1	HMPREF0889_0735	HMPREF0889_0731	CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.	Cell shape determining protein, MreB/Mrl family; Identified by match to protein family HMM PF06723.	0.864
EFD93314.1	EFD93316.1	HMPREF0889_0735	HMPREF0889_0737	CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.	S1 RNA binding domain protein; Identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757.	0.702
EFD93314.1	mrdA	HMPREF0889_0735	HMPREF0889_0734	CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656.	Penicillin-binding protein 2; Identified by match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423.	0.802