STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFD93562.1Hypothetical protein; Identified by glimmer; putative. (147 aa)    
Predicted Functional Partners:
EFD93563.1
Hypothetical protein; Identified by glimmer; putative.
       0.721
EFD93561.1
Hypothetical protein; Identified by glimmer; putative.
       0.708
EFD93564.1
Hypothetical protein; Identified by glimmer; putative.
       0.688
EFD93559.1
Hypothetical protein; Identified by glimmer; putative.
       0.679
EFD93560.1
Hypothetical protein; Identified by glimmer; putative.
       0.679
EFD93557.1
Hypothetical protein; Identified by glimmer; putative.
       0.677
EFD93558.1
Hypothetical protein.
       0.677
EFD93556.1
Putative general secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532.
       0.609
EFD93565.1
Hypothetical protein; Identified by glimmer; putative.
       0.582
EFD93553.1
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
       0.575
Your Current Organism:
Megasphaera genomosp.
NCBI taxonomy Id: 699218
Other names: M. genomosp. type_1 str. 28L, Megasphaera genomosp. type_1 str. 28L
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