Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADC90528.1 | ADC91134.1 | HMPREF0868_0088 | HMPREF0868_0628 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family. | 0.711 |
| ADC90528.1 | ADC91573.1 | HMPREF0868_0088 | HMPREF0868_0087 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | 0.997 |
| ADC90528.1 | ADN43922.1 | HMPREF0868_0088 | HMPREF0868_1208 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.477 |
| ADC90528.1 | ADN43923.1 | HMPREF0868_0088 | HMPREF0868_1207 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.477 |
| ADC90528.1 | dnaA | HMPREF0868_0088 | HMPREF0868_0093 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.481 |
| ADC90528.1 | ftsZ | HMPREF0868_0088 | HMPREF0868_0344 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.477 |
| ADC90528.1 | gidB | HMPREF0868_0088 | HMPREF0868_1290 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.539 |
| ADC90528.1 | polA | HMPREF0868_0088 | HMPREF0868_0853 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.479 |
| ADC90528.1 | scpB | HMPREF0868_0088 | HMPREF0868_1045 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.422 |
| ADC90528.1 | smc | HMPREF0868_0088 | HMPREF0868_0645 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.442 |
| ADC91134.1 | ADC90528.1 | HMPREF0868_0628 | HMPREF0868_0088 | Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family. | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.711 |
| ADC91134.1 | ftsZ | HMPREF0868_0628 | HMPREF0868_0344 | Identified by match to protein family HMM PF01580; match to protein family HMM PF09397; Belongs to the FtsK/SpoIIIE/SftA family. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.592 |
| ADC91573.1 | ADC90528.1 | HMPREF0868_0087 | HMPREF0868_0088 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.997 |
| ADC91573.1 | dnaA | HMPREF0868_0087 | HMPREF0868_0093 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.655 |
| ADC91573.1 | ftsZ | HMPREF0868_0087 | HMPREF0868_0344 | CobQ/CobB/MinD/ParA nucleotide binding domain protein; Identified by match to protein family HMM PF01656. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.516 |
| ADN43922.1 | ADC90528.1 | HMPREF0868_1208 | HMPREF0868_0088 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.477 |
| ADN43922.1 | ADN43923.1 | HMPREF0868_1208 | HMPREF0868_1207 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.994 |
| ADN43923.1 | ADC90528.1 | HMPREF0868_1207 | HMPREF0868_0088 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.477 |
| ADN43923.1 | ADN43922.1 | HMPREF0868_1207 | HMPREF0868_1208 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.994 |
| dnaA | ADC90528.1 | HMPREF0868_0093 | HMPREF0868_0088 | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. | 0.481 |
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