ADC90736.1 protein (Mageeibacillus indolicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ADC90736.1

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (505 aa)

Predicted Functional Partners:

ADC91728.1

0.974

ADC91326.1

0.946

ADC91365.1

0.856

ADC90940.1

0.844

ADC91155.1

0.837

ADC90691.1

0.837

ADC91467.1

0.825

ADC90432.1

0.745

ADC90578.1

0.654

ADC91398.1

0.648

Your Current Organism:

Mageeibacillus indolicus

NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADC90432.1	ADC90691.1	HMPREF0868_0331	HMPREF0868_1191	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.682
ADC90432.1	ADC90736.1	HMPREF0868_0331	HMPREF0868_0143	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.745
ADC90432.1	ADC91467.1	HMPREF0868_0331	HMPREF0868_1407	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.744
ADC90432.1	ADC91728.1	HMPREF0868_0331	HMPREF0868_0144	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.682
ADC90578.1	ADC90691.1	HMPREF0868_1408	HMPREF0868_1191	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.775
ADC90578.1	ADC90736.1	HMPREF0868_1408	HMPREF0868_0143	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.654
ADC90578.1	ADC91467.1	HMPREF0868_1408	HMPREF0868_1407	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.948
ADC90578.1	ADC91728.1	HMPREF0868_1408	HMPREF0868_0144	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.728
ADC90691.1	ADC90432.1	HMPREF0868_1191	HMPREF0868_0331	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	0.682
ADC90691.1	ADC90578.1	HMPREF0868_1191	HMPREF0868_1408	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.775
ADC90691.1	ADC90736.1	HMPREF0868_1191	HMPREF0868_0143	Cobalt transport protein; Identified by match to protein family HMM PF02361.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.837
ADC90691.1	ADC91326.1	HMPREF0868_1191	HMPREF0868_0145	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.569
ADC90691.1	ADC91398.1	HMPREF0868_1191	HMPREF0868_1192	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.948
ADC90691.1	ADC91467.1	HMPREF0868_1191	HMPREF0868_1407	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.927
ADC90691.1	ADC91728.1	HMPREF0868_1191	HMPREF0868_0144	Cobalt transport protein; Identified by match to protein family HMM PF02361.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.919
ADC90736.1	ADC90432.1	HMPREF0868_0143	HMPREF0868_0331	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cobalt transport protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02361.	0.745
ADC90736.1	ADC90578.1	HMPREF0868_0143	HMPREF0868_1408	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.	0.654
ADC90736.1	ADC90691.1	HMPREF0868_0143	HMPREF0868_1191	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Cobalt transport protein; Identified by match to protein family HMM PF02361.	0.837
ADC90736.1	ADC90940.1	HMPREF0868_0143	HMPREF0868_0141	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.844
ADC90736.1	ADC91155.1	HMPREF0868_0143	HMPREF0868_0142	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.837