ADC90637.1 protein (Mageeibacillus indolicus)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ADC90637.1

Hypothetical protein. (262 aa)

Predicted Functional Partners:

ADN43946.1

0.987

ADC91119.1

0.952

ADN43947.1

0.768

ADC91696.1

0.470

Your Current Organism:

Mageeibacillus indolicus

NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADC90637.1	ADC91119.1	HMPREF0868_0200	HMPREF0868_0199	Hypothetical protein.	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	0.952
ADC90637.1	ADC91696.1	HMPREF0868_0200	HMPREF0868_0197	Hypothetical protein.	Exonuclease; Identified by match to protein family HMM PF00929.	0.470
ADC90637.1	ADN43946.1	HMPREF0868_0200	HMPREF0868_0201	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.987
ADC90637.1	ADN43947.1	HMPREF0868_0200	HMPREF0868_0198	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	0.768
ADC91119.1	ADC90637.1	HMPREF0868_0199	HMPREF0868_0200	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	Hypothetical protein.	0.952
ADC91119.1	ADC91696.1	HMPREF0868_0199	HMPREF0868_0197	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	Exonuclease; Identified by match to protein family HMM PF00929.	0.470
ADC91119.1	ADN43946.1	HMPREF0868_0199	HMPREF0868_0201	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.950
ADC91119.1	ADN43947.1	HMPREF0868_0199	HMPREF0868_0198	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	0.768
ADC91696.1	ADC90637.1	HMPREF0868_0197	HMPREF0868_0200	Exonuclease; Identified by match to protein family HMM PF00929.	Hypothetical protein.	0.470
ADC91696.1	ADC91119.1	HMPREF0868_0197	HMPREF0868_0199	Exonuclease; Identified by match to protein family HMM PF00929.	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	0.470
ADC91696.1	ADN43946.1	HMPREF0868_0197	HMPREF0868_0201	Exonuclease; Identified by match to protein family HMM PF00929.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.470
ADC91696.1	ADN43947.1	HMPREF0868_0197	HMPREF0868_0198	Exonuclease; Identified by match to protein family HMM PF00929.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	0.473
ADN43946.1	ADC90637.1	HMPREF0868_0201	HMPREF0868_0200	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Hypothetical protein.	0.987
ADN43946.1	ADC91119.1	HMPREF0868_0201	HMPREF0868_0199	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	0.950
ADN43946.1	ADC91696.1	HMPREF0868_0201	HMPREF0868_0197	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Exonuclease; Identified by match to protein family HMM PF00929.	0.470
ADN43946.1	ADN43947.1	HMPREF0868_0201	HMPREF0868_0198	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	0.768
ADN43947.1	ADC90637.1	HMPREF0868_0198	HMPREF0868_0200	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	Hypothetical protein.	0.768
ADN43947.1	ADC91119.1	HMPREF0868_0198	HMPREF0868_0199	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	Amidohydrolase; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687.	0.768
ADN43947.1	ADC91696.1	HMPREF0868_0198	HMPREF0868_0197	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	Exonuclease; Identified by match to protein family HMM PF00929.	0.473
ADN43947.1	ADN43946.1	HMPREF0868_0198	HMPREF0868_0201	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM TIGR01376.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop.	0.768