STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC90871.1Putative N-acetylneuraminate lyase; Identified by match to protein family HMM PF00701; Belongs to the DapA family. (301 aa)    
Predicted Functional Partners:
ADC91347.1
N-acylglucosamine 2-epimerase; Identified by match to protein family HMM PF07221.
 
  
 0.937
ADC90761.1
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.819
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
     
 0.803
ADC91825.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.640
ADC90979.1
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.636
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.626
asd
Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR00978; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
  
 0.594
ADC90725.1
Chorismate mutase; Identified by match to protein family HMM PF01817.
  
  
 0.565
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
 
    0.550
ADC91668.1
Transcriptional regulator, RpiR family; Identified by match to protein family HMM PF01380; match to protein family HMM PF01418.
 
   
 0.509
Your Current Organism:
Mageeibacillus indolicus
NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5
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