ADC91123.1 protein (Mageeibacillus indolicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ADC91123.1

ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (277 aa)

Predicted Functional Partners:

ADC91331.1

0.987

ADC91655.1

0.963

ADC90746.1

0.959

ADC90487.1

0.879

ADC91826.1

0.825

ADC90673.1

0.825

ADC91073.1

0.824

ADC90565.1

0.824

ADC91550.1

0.823

ADC91033.1

0.821

Your Current Organism:

Mageeibacillus indolicus

NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADC90487.1	ADC90673.1	HMPREF0868_0569	HMPREF0868_0992	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.453
ADC90487.1	ADC90746.1	HMPREF0868_0569	HMPREF0868_0567	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.884
ADC90487.1	ADC91033.1	HMPREF0868_0569	HMPREF0868_0639	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.443
ADC90487.1	ADC91073.1	HMPREF0868_0569	HMPREF0868_0571	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.774
ADC90487.1	ADC91123.1	HMPREF0868_0569	HMPREF0868_0568	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.879
ADC90487.1	ADC91331.1	HMPREF0868_0569	HMPREF0868_0566	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.768
ADC90565.1	ADC91123.1	HMPREF0868_1467	HMPREF0868_0568	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.824
ADC90565.1	ADC91331.1	HMPREF0868_1467	HMPREF0868_0566	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.548
ADC90673.1	ADC90487.1	HMPREF0868_0992	HMPREF0868_0569	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.453
ADC90673.1	ADC91123.1	HMPREF0868_0992	HMPREF0868_0568	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.825
ADC90673.1	ADC91331.1	HMPREF0868_0992	HMPREF0868_0566	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.475
ADC90746.1	ADC90487.1	HMPREF0868_0567	HMPREF0868_0569	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.884
ADC90746.1	ADC91073.1	HMPREF0868_0567	HMPREF0868_0571	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.806
ADC90746.1	ADC91123.1	HMPREF0868_0567	HMPREF0868_0568	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.959
ADC90746.1	ADC91331.1	HMPREF0868_0567	HMPREF0868_0566	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.	0.923
ADC91033.1	ADC90487.1	HMPREF0868_0639	HMPREF0868_0569	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.443
ADC91033.1	ADC91123.1	HMPREF0868_0639	HMPREF0868_0568	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.821
ADC91073.1	ADC90487.1	HMPREF0868_0571	HMPREF0868_0569	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.774
ADC91073.1	ADC90746.1	HMPREF0868_0571	HMPREF0868_0567	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.806
ADC91073.1	ADC91123.1	HMPREF0868_0571	HMPREF0868_0568	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.824