ADC91599.1 protein (Mageeibacillus indolicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ADC91599.1

Identified by match to protein family HMM PF00459. (295 aa)

Predicted Functional Partners:

ADC91368.1

0.907

ADC90819.1

0.907

ADC91711.1

0.773

ADC91405.1

0.656

valS

0.644

nusA

0.639

ftsY

0.613

rpoZ

0.610

nusG

0.607

rpoB

0.602

Your Current Organism:

Mageeibacillus indolicus

NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADC90819.1	ADC91368.1	HMPREF0868_0021	HMPREF0868_0020	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.959
ADC90819.1	ADC91599.1	HMPREF0868_0021	HMPREF0868_0647	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	Identified by match to protein family HMM PF00459.	0.907
ADC91368.1	ADC90819.1	HMPREF0868_0020	HMPREF0868_0021	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.959
ADC91368.1	ADC91599.1	HMPREF0868_0020	HMPREF0868_0647	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	Identified by match to protein family HMM PF00459.	0.907
ADC91405.1	ADC91599.1	HMPREF0868_0931	HMPREF0868_0647	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Identified by match to protein family HMM PF00459.	0.656
ADC91405.1	nusA	HMPREF0868_0931	HMPREF0868_0247	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.701
ADC91405.1	nusG	HMPREF0868_0931	HMPREF0868_1276	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.615
ADC91405.1	rpoB	HMPREF0868_0931	HMPREF0868_0195	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.756
ADC91405.1	rpoZ	HMPREF0868_0931	HMPREF0868_1483	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.740
ADC91599.1	ADC90819.1	HMPREF0868_0647	HMPREF0868_0021	Identified by match to protein family HMM PF00459.	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.907
ADC91599.1	ADC91368.1	HMPREF0868_0647	HMPREF0868_0020	Identified by match to protein family HMM PF00459.	Oxidoreductase, NAD-binding domain protein; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.	0.907
ADC91599.1	ADC91405.1	HMPREF0868_0647	HMPREF0868_0931	Identified by match to protein family HMM PF00459.	Putative ribosomal RNA small subunit methyltransferase B; Identified by match to protein family HMM PF01029; match to protein family HMM PF01189; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	0.656
ADC91599.1	ADC91711.1	HMPREF0868_0647	HMPREF0868_0648	Identified by match to protein family HMM PF00459.	Hypothetical protein.	0.773
ADC91599.1	ftsY	HMPREF0868_0647	HMPREF0868_0646	Identified by match to protein family HMM PF00459.	Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).	0.613
ADC91599.1	nusA	HMPREF0868_0647	HMPREF0868_0247	Identified by match to protein family HMM PF00459.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.639
ADC91599.1	nusG	HMPREF0868_0647	HMPREF0868_1276	Identified by match to protein family HMM PF00459.	Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination.	0.607
ADC91599.1	rpoB	HMPREF0868_0647	HMPREF0868_0195	Identified by match to protein family HMM PF00459.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.602
ADC91599.1	rpoZ	HMPREF0868_0647	HMPREF0868_1483	Identified by match to protein family HMM PF00459.	DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.610
ADC91599.1	valS	HMPREF0868_0647	HMPREF0868_0649	Identified by match to protein family HMM PF00459.	valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.	0.644
ADC91711.1	ADC91599.1	HMPREF0868_0648	HMPREF0868_0647	Hypothetical protein.	Identified by match to protein family HMM PF00459.	0.773