STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC90916.1Identified by match to protein family HMM PF00657. (212 aa)    
Predicted Functional Partners:
ADC90878.1
Putative cysteine desulfurase NifS; Identified by match to protein family HMM PF00266; match to protein family HMM PF01212.
  
    0.712
ADC91542.1
Recombination factor protein RarA; Identified by match to protein family HMM PF00004.
       0.705
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
       0.602
ADC90612.1
LPXTG-motif cell wall anchor domain protein; Identified by match to protein family HMM TIGR01167.
  
 
 0.522
ADC90590.1
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
  
    0.432
ADC91830.1
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.
       0.413
Your Current Organism:
Mageeibacillus indolicus
NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5
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