STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADC91378.1Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165. (402 aa)    
Predicted Functional Partners:
ADC91079.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
    0.600
ADC91728.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.588
ADC91326.1
Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
    0.575
ADC91399.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
    0.561
ADC90736.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.509
ADC90691.1
Cobalt transport protein; Identified by match to protein family HMM PF02361.
 
     0.505
ADC90635.1
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     0.494
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.461
ADC91398.1
Conserved hypothetical protein TIGR02185; Identified by match to protein family HMM PF09605; match to protein family HMM TIGR02185.
 
    0.443
ADC90588.1
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
  
    0.433
Your Current Organism:
Mageeibacillus indolicus
NCBI taxonomy Id: 699246
Other names: Clostridiales genomosp. BVAB3 str. UPII9-5, M. indolicus UPII9-5, Mageeibacillus indolicus UPII9-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.