Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADC90371.1 | ADC91354.1 | HMPREF0868_1198 | HMPREF0868_1201 | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | 0.559 |
| ADC90371.1 | ADC91773.1 | HMPREF0868_1198 | HMPREF0868_1200 | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | 0.638 |
| ADC90371.1 | ADN43924.1 | HMPREF0868_1198 | HMPREF0868_1197 | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.814 |
| ADC90762.1 | ADN43924.1 | HMPREF0868_0741 | HMPREF0868_1197 | comF family protein. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.414 |
| ADC90887.1 | ADC91354.1 | HMPREF0868_1204 | HMPREF0868_1201 | Hypothetical protein. | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | 0.723 |
| ADC90887.1 | ADC91773.1 | HMPREF0868_1204 | HMPREF0868_1200 | Hypothetical protein. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | 0.750 |
| ADC90887.1 | ADN43924.1 | HMPREF0868_1204 | HMPREF0868_1197 | Hypothetical protein. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.414 |
| ADC91354.1 | ADC90371.1 | HMPREF0868_1201 | HMPREF0868_1198 | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | 0.559 |
| ADC91354.1 | ADC90887.1 | HMPREF0868_1201 | HMPREF0868_1204 | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | Hypothetical protein. | 0.723 |
| ADC91354.1 | ADC91773.1 | HMPREF0868_1201 | HMPREF0868_1200 | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | 0.780 |
| ADC91354.1 | ADN43924.1 | HMPREF0868_1201 | HMPREF0868_1197 | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.569 |
| ADC91570.1 | ADN43924.1 | HMPREF0868_1489 | HMPREF0868_1197 | Putative toxin-antitoxin system, toxin component; Identified by match to protein family HMM PF06114. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.465 |
| ADC91773.1 | ADC90371.1 | HMPREF0868_1200 | HMPREF0868_1198 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | 0.638 |
| ADC91773.1 | ADC90887.1 | HMPREF0868_1200 | HMPREF0868_1204 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | Hypothetical protein. | 0.750 |
| ADC91773.1 | ADC91354.1 | HMPREF0868_1200 | HMPREF0868_1201 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | 0.780 |
| ADC91773.1 | ADN43924.1 | HMPREF0868_1200 | HMPREF0868_1197 | RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281. | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | 0.688 |
| ADN43924.1 | ADC90371.1 | HMPREF0868_1197 | HMPREF0868_1198 | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | DNA binding domain, excisionase family; Identified by match to protein family HMM PF09035. | 0.814 |
| ADN43924.1 | ADC90762.1 | HMPREF0868_1197 | HMPREF0868_0741 | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | comF family protein. | 0.414 |
| ADN43924.1 | ADC90887.1 | HMPREF0868_1197 | HMPREF0868_1204 | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | Hypothetical protein. | 0.414 |
| ADN43924.1 | ADC91354.1 | HMPREF0868_1197 | HMPREF0868_1201 | Site-specific recombinase, phage integrase family; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00589; Belongs to the 'phage' integrase family. | DNA-binding helix-turn-helix protein; Identified by match to protein family HMM PF01381. | 0.569 |
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