Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADC91428.1 | acpP | HMPREF0868_1312 | HMPREF0868_0637 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.676 |
| ADC91428.1 | rplK | HMPREF0868_1312 | HMPREF0868_1275 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.654 |
| ADC91428.1 | rplO | HMPREF0868_1312 | HMPREF0868_1521 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.681 |
| ADC91428.1 | rplQ | HMPREF0868_1312 | HMPREF0868_1511 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.692 |
| ADC91428.1 | rplT | HMPREF0868_1312 | HMPREF0868_1313 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.816 |
| ADC91428.1 | rplU | HMPREF0868_1312 | HMPREF0868_0688 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.688 |
| ADC91428.1 | rsfS | HMPREF0868_1312 | HMPREF0868_0800 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.717 |
| ADC91428.1 | trmE | HMPREF0868_1312 | HMPREF0868_1292 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.682 |
| ADC91428.1 | ylqF | HMPREF0868_1312 | HMPREF0868_1170 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.689 |
| ADC91428.1 | ysxC | HMPREF0868_1312 | HMPREF0868_0897 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.675 |
| acpP | ADC91428.1 | HMPREF0868_0637 | HMPREF0868_1312 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.676 |
| acpP | rplK | HMPREF0868_0637 | HMPREF0868_1275 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.931 |
| acpP | rplO | HMPREF0868_0637 | HMPREF0868_1521 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.911 |
| acpP | rplQ | HMPREF0868_0637 | HMPREF0868_1511 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.952 |
| acpP | rplT | HMPREF0868_0637 | HMPREF0868_1313 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.794 |
| acpP | rplU | HMPREF0868_0637 | HMPREF0868_0688 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.968 |
| acpP | rsfS | HMPREF0868_0637 | HMPREF0868_0800 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. | 0.921 |
| acpP | trmE | HMPREF0868_0637 | HMPREF0868_1292 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.836 |
| acpP | ylqF | HMPREF0868_0637 | HMPREF0868_1170 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosome biogenesis GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.896 |
| acpP | ysxC | HMPREF0868_0637 | HMPREF0868_0897 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. | 0.841 |
page 1 of 6