STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_00038COG0477 Permeases of the major facilitator superfamily. (73 aa)    
Predicted Functional Partners:
SRA_00043
Hypothetical protein.
       0.773
SRA_10063
Putative oxidoreductase; Fumarate reductase; COG0431 Predicted flavoprotein.
 
  
 0.562
SRA_00048
COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
  
 0.497
ManX
Putative PTS system, mannose-specific component IIAB; COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
  
    0.441
SRA_00163
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.411
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.