STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CopZCOG2608 Copper chaperone. (67 aa)    
Predicted Functional Partners:
SRA_00453
P-type ATPase; COG2217 Cation transport ATPase.
  
 
 0.944
SRA_00448
Negative transcriptional regulator, CopY; COG3682 Predicted transcriptional regulator.
  
  
 0.903
CadA
Heavy metal translocating P-type ATPase; COG2217 Cation transport ATPase.
  
 
 0.778
SRA_00463
Hypothetical protein; COG0561 Predicted hydrolases of the HAD superfamily.
       0.521
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.478
SRA_00443
Hypothetical protein.
       0.443
SRA_08736
COG1937 Uncharacterized protein conserved in bacteria.
  
  
 0.412
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.