STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_00678COG4758 Predicted membrane protein. (231 aa)    
Predicted Functional Partners:
SRA_00683
COG4585 Signal transduction histidine kinase.
 
  
 0.952
SRA_00688
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  
 0.912
SRA_01087
COG1286 Uncharacterized membrane protein, required for colicin V production.
  
     0.730
SRA_00698
COG1098 Predicted RNA binding protein (contains ribosomal protein S1 domain).
     
 0.700
SRA_06921
Hypothetical protein; COG4109 Predicted transcriptional regulator containing CBS domains.
  
     0.687
SRA_00693
COG0561 Predicted hydrolases of the HAD superfamily.
       0.675
SRA_04986
COG4116 Uncharacterized protein conserved in bacteria.
  
     0.666
PknB
COG0515 Serine/threonine protein kinase.
  
    0.658
SRA_07641
MutT family hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.
  
     0.624
SRA_07646
Hypothetical protein.
  
     0.616
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.