Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SRA_00213 | SRA_00713 | SRA_00213 | SRA_00713 | COG4470 Uncharacterized protein conserved in bacteria. | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | 0.584 |
| SRA_00708 | SRA_00713 | SRA_00708 | SRA_00713 | Hypothetical protein. | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | 0.619 |
| SRA_00708 | SRA_00718 | SRA_00708 | SRA_00718 | Hypothetical protein. | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | 0.618 |
| SRA_00708 | hpf | SRA_00708 | SRA_00723 | Hypothetical protein. | Putative ribosome-associated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.534 |
| SRA_00713 | SRA_00213 | SRA_00713 | SRA_00213 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | COG4470 Uncharacterized protein conserved in bacteria. | 0.584 |
| SRA_00713 | SRA_00708 | SRA_00713 | SRA_00708 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Hypothetical protein. | 0.619 |
| SRA_00713 | SRA_00718 | SRA_00713 | SRA_00718 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | 0.896 |
| SRA_00713 | SRA_01542 | SRA_00713 | SRA_01542 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Hypothetical protein; COG2165 Type II secretory pathway, pseudopilin PulG. | 0.651 |
| SRA_00713 | SRA_01552 | SRA_00713 | SRA_01552 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | COG4537 Competence protein ComGC. | 0.748 |
| SRA_00713 | SRA_01557 | SRA_00713 | SRA_01557 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | ABC transporter ComYB; COG1459 Type II secretory pathway, component PulF. | 0.573 |
| SRA_00713 | SRA_01562 | SRA_00713 | SRA_01562 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Putative ABC transporter, ATP-binding protein ComYA; Late competence gene; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. | 0.782 |
| SRA_00713 | SRA_07376 | SRA_00713 | SRA_07376 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Putative competence protein; COG0658 Predicted membrane metal-binding protein. | 0.602 |
| SRA_00713 | SRA_07381 | SRA_00713 | SRA_07381 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Putative competence protein; COG1555 DNA uptake protein and related DNA-binding proteins. | 0.627 |
| SRA_00713 | hpf | SRA_00713 | SRA_00723 | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | Putative ribosome-associated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.601 |
| SRA_00718 | SRA_00708 | SRA_00718 | SRA_00708 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | Hypothetical protein. | 0.618 |
| SRA_00718 | SRA_00713 | SRA_00718 | SRA_00713 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name. | 0.896 |
| SRA_00718 | SRA_01542 | SRA_00718 | SRA_01542 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | Hypothetical protein; COG2165 Type II secretory pathway, pseudopilin PulG. | 0.433 |
| SRA_00718 | SRA_01557 | SRA_00718 | SRA_01557 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | ABC transporter ComYB; COG1459 Type II secretory pathway, component PulF. | 0.609 |
| SRA_00718 | SRA_01562 | SRA_00718 | SRA_01562 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | Putative ABC transporter, ATP-binding protein ComYA; Late competence gene; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. | 0.422 |
| SRA_00718 | SRA_07376 | SRA_00718 | SRA_07376 | Putative late competence protein; COG1040 Predicted amidophosphoribosyltransferases; overlaps another CDS with the same product name. | Putative competence protein; COG0658 Predicted membrane metal-binding protein. | 0.743 |
page 1 of 4