STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_00907Putative biotin biosynthesis protein. (178 aa)    
Predicted Functional Partners:
ecfT
Cobalt permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.943
SRA_01267
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
  
 0.924
cbiO
Cobalt transporter ATP-binding subunit; COG1122 ABC-type cobalt transport system, ATPase component; overlaps another CDS with the same product name.
   
 0.922
cbiO-2
Cobalt transporter ATP-binding subunit; COG1122 ABC-type cobalt transport system, ATPase component; overlaps another CDS with the same product name.
   
 0.922
birA
Biotin--protein ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.722
SRA_00912
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
       0.554
SRA_00902
Aminotransferase AlaT; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
       0.503
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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