STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_00912COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (149 aa)    
Predicted Functional Partners:
SRA_01527
Hypothetical protein; COG0827 Adenine-specific DNA methylase.
  
     0.655
SRA_00907
Putative biotin biosynthesis protein.
       0.554
SRA_06386
TPR repeat-containing protein; COG0457 FOG: TPR repeat.
  
     0.540
SRA_00892
Putative pyrazinamidase/nicotinamidase; COG1335 Amidases related to nicotinamidase.
 
  
 0.508
SRA_03771
Integral membrane protein; COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily.
  
    0.503
hpf
Putative ribosome-associated protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.468
SRA_00902
Aminotransferase AlaT; COG0436 Aspartate/tyrosine/aromatic aminotransferase.
  
  
 0.441
SRA_00613
COG4474 Uncharacterized protein conserved in bacteria; Belongs to the UPF0398 family.
  
     0.436
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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