STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01272Putative cobalt ABC transporter, ATP-binding protein; COG1122 ABC-type cobalt transport system, ATPase component. (558 aa)    
Predicted Functional Partners:
SRA_01267
COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
 0.994
SRA_01257
COG2801 Transposase and inactivated derivatives.
       0.773
SRA_01262
ORFA, transposon ISSsa2; COG2963 Transposase and inactivated derivatives.
       0.773
SRA_01287
Hypothetical protein.
 
     0.757
ecfT
Cobalt permease; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
 0.752
SRA_01252
Hypothetical protein.
       0.664
SRA_09678
Putative oligopeptide ABC transporter, ATP-binding protein OppD; COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
  
0.651
SRA_06511
COG1396 Predicted transcriptional regulators.
  
     0.527
SRA_08831
COG1396 Predicted transcriptional regulators.
  
     0.511
SRA_09688
Putative oligopeptide transport system, permease protein OppB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
  
  
 0.505
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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