STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01482Putative periplasmic sugar-binding protein; COG1879 ABC-type sugar transport system, periplasmic component. (319 aa)    
Predicted Functional Partners:
SRA_01467
Putative sugar-binding periplasmic protein; COG1653 ABC-type sugar transport system, periplasmic component.
 
  
 0.964
SRA_01472
COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
 
  
 0.947
SRA_01477
COG4585 Signal transduction histidine kinase.
 
  
 0.945
SRA_01452
COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
 
     0.831
SRA_01457
COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
 
   
 0.829
SRA_01462
Putative PTS system, sugar-specific enzyme IIA component; COG2893 Phosphotransferase system, mannose/fructose-specific component IIA.
 
   
 0.806
SRA_01447
COG3716 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
 
   
 0.798
SRA_01442
Hypothetical protein.
 
     0.797
SRA_01567
COG0642 Signal transduction histidine kinase.
    
 
 0.592
SRA_03896
COG0642 Signal transduction histidine kinase.
    
 
 0.592
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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