STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01547Putative competence protein ComYD; COG2165 Type II secretory pathway, pseudopilin PulG. (135 aa)    
Predicted Functional Partners:
SRA_01557
ABC transporter ComYB; COG1459 Type II secretory pathway, component PulF.
  
  
 0.832
SRA_01542
Hypothetical protein; COG2165 Type II secretory pathway, pseudopilin PulG.
  
  
 0.831
SRA_01562
Putative ABC transporter, ATP-binding protein ComYA; Late competence gene; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
     
 0.825
SRA_01532
Hypothetical protein.
       0.800
SRA_01537
COG4940 Competence protein ComGF.
       0.800
SRA_01552
COG4537 Competence protein ComGC.
       0.800
SRA_01527
Hypothetical protein; COG0827 Adenine-specific DNA methylase.
       0.668
SRA_01567
COG0642 Signal transduction histidine kinase.
       0.613
SRA_01572
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.613
ackA
Putative acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
       0.549
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.