STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01562Putative ABC transporter, ATP-binding protein ComYA; Late competence gene; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB. (313 aa)    
Predicted Functional Partners:
SRA_01557
ABC transporter ComYB; COG1459 Type II secretory pathway, component PulF.
 
 
 0.994
SRA_01542
Hypothetical protein; COG2165 Type II secretory pathway, pseudopilin PulG.
  
 
 0.976
SRA_01552
COG4537 Competence protein ComGC.
 
  
 0.960
SRA_01537
COG4940 Competence protein ComGF.
  
  
 0.929
SRA_00298
Signal peptidase type IV; COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases.
 
 
 0.876
SRA_01547
Putative competence protein ComYD; COG2165 Type II secretory pathway, pseudopilin PulG.
     
 0.825
SRA_01532
Hypothetical protein.
     
 0.806
SRA_00713
Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name.
   
  
 0.782
SRA_07376
Putative competence protein; COG0658 Predicted membrane metal-binding protein.
 
  
 0.732
SRA_01527
Hypothetical protein; COG0827 Adenine-specific DNA methylase.
       0.668
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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