STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01617COG1846 Transcriptional regulators. (146 aa)    
Predicted Functional Partners:
SRA_01607
Putative ABC transporter, zinc permease protein; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
  
  
 0.976
SRA_01612
Putative ABC transporter, ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
  
  
 0.976
SRA_03461
Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.905
SRA_07826
Hypothetical protein; COG1522 Transcriptional regulators.
  
     0.718
SRA_04091
RgpFc protein; COG3754 Lipopolysaccharide biosynthesis protein.
  
     0.709
SRA_09416
COG4466 Uncharacterized protein conserved in bacteria.
  
     0.632
SRA_03141
Putative endolysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.600
SRA_01217
COG3611 Replication initiation/membrane attachment protein.
  
     0.582
ipk
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol; Belongs to the GHMP kinase family. IspE subfamily.
       0.543
SRA_09616
COG2367 Beta-lactamase class A.
  
     0.527
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.