STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_01929Branched chain amino acid transport system II carrier protein; COG1914 Mn2+ and Fe2+ transporters of the NRAMP family. (400 aa)    
Predicted Functional Partners:
SRA_01919
Urea amidolyase related protein; COG1984 Allophanate hydrolase subunit 2.
 
  
 0.914
PxpB
COG2049 Allophanate hydrolase subunit 1.
 
  
 0.911
pxpA
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.896
SRA_01914
COG0439 Biotin carboxylase.
       0.628
SRA_01607
Putative ABC transporter, zinc permease protein; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
   
  
 0.460
SRA_01899
Hypothetical protein; COG2026 Cytotoxic translational repressor of toxin-antitoxin stability system.
 
     0.446
SRA_01904
Hypothetical protein.
 
     0.411
SRA_03461
Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.404
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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