STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_02004Putative secreted antigen GbpB/SagA; Putative peptidoglycan hydrolase; COG3883 Uncharacterized protein conserved in bacteria. (453 aa)    
Predicted Functional Partners:
SRA_03296
Putative cell-division protein FtsX; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.708
MreD
COG2891 Cell shape-determining protein.
 
   
 0.679
SRA_05201
Hypothetical protein; COG3942 Surface antigen.
 
  
 0.667
SRA_08911
Hypothetical protein.
  
     0.654
MreC
Putative cell shape-determining protein MreC; Involved in formation and maintenance of cell shape.
     
 0.618
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
     
 0.587
SRA_10008
exo-beta-D-fructosidase; fructanase, FruA; COG1621 Beta-fructosidases (levanase/invertase).
  
  
 0.587
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.563
ftsE
Putative ABC transporter, ATP-binding component; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.554
SRA_04451
COG4835 Uncharacterized protein conserved in bacteria.
  
     0.455
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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