STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_02141COG1418 Predicted HD superfamily hydrolase. (167 aa)    
Predicted Functional Partners:
SRA_02146
COG0670 Integral membrane protein, interacts with FtsH; Belongs to the BI1 family.
  
    0.752
SRA_02136
COG0566 rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
     
 0.697
SRA_04971
Hypothetical protein.
  
     0.581
SRA_02131
COG1254 Acylphosphatases.
     
 0.559
SRA_02151
COG0019 Diaminopimelate decarboxylase.
 
     0.547
SRA_04686
Hypothetical protein.
 
 
   0.526
yidC
OxaA-like protein precursor; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily.
 
    0.502
SRA_04396
COG1837 Predicted RNA-binding protein (contains KH domain); Belongs to the UPF0109 family.
  
     0.473
SRA_08971
Putative transmembrane protein; COG4485 Predicted membrane protein.
  
     0.462
SRA_08981
Putative transmembrane protein; COG4485 Predicted membrane protein.
  
     0.461
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.