STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_02391Hypothetical protein; Belongs to the UPF0342 family. (146 aa)    
Predicted Functional Partners:
SRA_09111
COG4550 Predicted membrane protein; Belongs to the UPF0342 family.
  
 
 
 0.900
SRA_02396
COG4471 Uncharacterized protein conserved in bacteria.
  
    0.834
SRA_04986
COG4116 Uncharacterized protein conserved in bacteria.
  
     0.692
SRA_01527
Hypothetical protein; COG0827 Adenine-specific DNA methylase.
  
     0.667
SRA_02446
Putative signal peptidase II; COG1774 Uncharacterized homolog of PSP1.
 
   
 0.628
SRA_02401
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
       0.580
SRA_01087
COG1286 Uncharacterized membrane protein, required for colicin V production.
  
     0.576
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.541
pyrK
Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
     0.530
SRA_07666
Hypothetical protein; COG0762 Predicted integral membrane protein.
  
     0.507
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.