STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_02401COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component. (391 aa)    
Predicted Functional Partners:
SRA_02411
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.998
SRA_02406
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.997
SRA_02416
COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.996
SRA_02421
Leucine/isoleucine/valine transporter ATP-binding subunit; COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 
 0.994
SRA_04251
Response regulator receiver/ANTAR domain-containing protein; COG3707 Response regulator with putative antiterminator output domain.
  
 
 0.951
SRA_02431
Putative acetoin utilization protein, acetoin dehydrogenase; COG0517 FOG: CBS domain.
 
     0.709
SRA_02391
Hypothetical protein; Belongs to the UPF0342 family.
       0.580
SRA_02396
COG4471 Uncharacterized protein conserved in bacteria.
       0.580
SRA_02426
Hypothetical protein.
       0.548
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
  
 
 0.484
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.