STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_02461Ammonium transporter; COG0004 Ammonia permease. (411 aa)    
Predicted Functional Partners:
SRA_02466
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
 
 0.999
GltB
COG0067 Glutamate synthase domain 1.
 
  
 0.718
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
  
 0.544
GlnA
COG0174 Glutamine synthetase.
  
  
 0.528
AcnA
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
 
 0.485
SRA_04251
Response regulator receiver/ANTAR domain-containing protein; COG3707 Response regulator with putative antiterminator output domain.
  
  
 0.483
SRA_02441
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
       0.464
SRA_02446
Putative signal peptidase II; COG1774 Uncharacterized homolog of PSP1.
       0.464
YabA
DNA replication initiation control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
       0.464
rsmI
Hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.464
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.