STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03126COG2035 Predicted membrane protein. (280 aa)    
Predicted Functional Partners:
SRA_03116
COG3304 Predicted membrane protein.
       0.800
SRA_03121
Transcriptional regulator; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.800
SRA_03111
Phosphoglycerate mutase family protein; COG0406 Fructose-2,6-bisphosphatase.
       0.752
SRA_04191
Cell surface protein precursor.
  
     0.686
SRA_03131
COG5632 N-acetylmuramoyl-L-alanine amidase.
       0.677
SRA_03141
Putative endolysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
 
     0.465
SRA_05191
Cell wall-associated protein precursor WapA; COG4932 Predicted outer membrane protein.
  
     0.463
ThiT
COG3859 Predicted membrane protein.
       0.412
SRA_04706
COG3201 Nicotinamide mononucleotide transporter.
  
     0.403
SRA_01047
Hypothetical protein.
  
     0.402
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.