STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03141Putative endolysin; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase). (281 aa)    
Predicted Functional Partners:
SRA_07826
Hypothetical protein; COG1522 Transcriptional regulators.
  
     0.767
SRA_04091
RgpFc protein; COG3754 Lipopolysaccharide biosynthesis protein.
  
     0.721
SRA_01217
COG3611 Replication initiation/membrane attachment protein.
  
     0.720
SRA_09416
COG4466 Uncharacterized protein conserved in bacteria.
  
     0.704
SRA_09616
COG2367 Beta-lactamase class A.
  
     0.670
SRA_01427
COG4640 Predicted membrane protein.
  
     0.615
rexB
ATP-dependent nuclease subunit B; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. This subunit has 5' -> 3' nuclease activity; Belongs to the helicase family. AddB/RexB type 2 subfamily.
  
     0.606
SRA_01617
COG1846 Transcriptional regulators.
  
     0.600
SRA_09451
Hypothetical protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
 
    0.583
SRA_03146
COG0620 Methionine synthase II (cobalamin-independent).
       0.535
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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