STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03196Hypothetical protein; COG1078 HD superfamily phosphohydrolases. (436 aa)    
Predicted Functional Partners:
YqeH
GTP-binding protein YqeH; COG1161 Predicted GTPases.
  
     0.601
SRA_03201
Na+/solute symporter.
       0.596
SRA_03191
Hypothetical protein; COG0561 Predicted hydrolases of the HAD superfamily.
  
  
 0.538
rpoE
DNA-directed RNA polymerase subunit delta; Participates in both the initiation and recycling phases of transcription. In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling; Belongs to the RpoE family.
 
     0.534
SRA_03181
Putative peptidoglycan branched peptide synthesis protein; Alanine adding enzyme; beta-lactam resistance factor MurN; COG2348 Uncharacterized protein involved in methicillin resistance.
       0.528
SRA_03186
Putative peptidoglycan branched peptide synthesis protein MurM; COG2348 Uncharacterized protein involved in methicillin resistance.
       0.528
SRA_03206
COG4506 Uncharacterized protein conserved in bacteria.
     
 0.527
SRA_00713
Putative late competence protein; COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein); overlaps another CDS with the same product name.
  
     0.509
ppnK
Inorganic polyphosphate/ATP-NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
 
     0.422
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.