STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03226COG3829 Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains. (594 aa)    
Predicted Functional Partners:
SRA_03231
COG3395 Uncharacterized protein conserved in bacteria.
 
     0.895
PdxA
4-hydroxythreonine-4-phosphate dehydrogenase; COG1995 Pyridoxal phosphate biosynthesis protein; Belongs to the PdxA family.
 
  
 0.895
SRA_03251
Hypothetical protein; COG4692 Predicted neuraminidase (sialidase).
 
     0.813
SRA_03236
COG1454 Alcohol dehydrogenase, class IV.
 
   
 0.752
SRA_03216
Hypothetical protein; COG0471 Di- and tricarboxylate transporters.
 
   
 0.668
SRA_03221
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.552
GltB
COG0067 Glutamate synthase domain 1.
      
 0.431
SRA_04616
Hypothetical protein; COG0407 Uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
 
   
 0.428
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.