Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03341Hypothetical protein. (345 aa)    
Predicted Functional Partners:
SRA_03326
Hypothetical protein.
       0.757
SRA_03331
Hypothetical protein; COG0778 Nitroreductase.
       0.757
SRA_03336
Hypothetical protein.
       0.757
SRA_03346
Hypothetical protein.
     
 0.694
SRA_03351
Putative ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
     
 0.666
SRA_03321
Hypothetical protein.
       0.506
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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