STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03366COG0436 Aspartate/tyrosine/aromatic aminotransferase. (393 aa)    
Predicted Functional Partners:
SRA_01297
Putative carbon-nitrogen hydrolase; COG0388 Predicted amidohydrolase.
  
 
 0.917
SRA_00922
COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D.
    
 0.910
pheA
COG0077 Prephenate dehydratase.
 
  
 0.734
GltB
COG0067 Glutamate synthase domain 1.
  
  
 0.514
dinG
Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; 3'-5' exonuclease.
  
    0.494
SRA_04436
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
  
  
 0.446
SRA_03371
Hypothetical protein.
       0.433
asnC
COG0017 Aspartyl/asparaginyl-tRNA synthetases.
  
  
 0.416
SRA_04836
COG0460 Homoserine dehydrogenase.
 
 
 0.405
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.