Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SRA_03401COG1309 Transcriptional regulator. (202 aa)    
Predicted Functional Partners:
SRA_06696
Transcriptional regulator, TetR family protein; COG1309 Transcriptional regulator.
  
     0.756
SRA_05631
COG1309 Transcriptional regulator.
  
     0.735
SRA_09406
COG1309 Transcriptional regulator.
  
     0.669
SRA_07316
COG1309 Transcriptional regulator.
  
     0.620
SRA_03416
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
    0.530
SRA_03406
COG4420 Predicted membrane protein.
       0.520
RapZ
Hypothetical protein; Displays ATPase and GTPase activities.
       0.520
whiA
Putative sporulation transcription regulator whiA; Involved in cell division and chromosome segregation.
       0.520
SRA_03426
COG4690 Dipeptidase.
       0.490
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.453
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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