STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRA_03461Hypothetical protein; COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family. (506 aa)    
Predicted Functional Partners:
SRA_01607
Putative ABC transporter, zinc permease protein; COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components.
 
 
 0.999
SRA_01612
Putative ABC transporter, ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.999
SRA_01617
COG1846 Transcriptional regulators.
  
  
 0.905
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.828
rpmE2
COG0254 Ribosomal protein L31.
  
  
 0.678
rpmB
COG0227 Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.547
SRA_01969
COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain.
     
 0.544
SRA_07521
Putative ferric uptake regulator protein FurR; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
  
 0.544
SRA_10043
COG1321 Mn-dependent transcriptional regulator.
  
  
 0.524
SRA_03466
Oxidoreductase, putative; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.473
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.