Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SRA_03471Hypothetical protein; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (115 aa)    
Predicted Functional Partners:
SRA_03476
Putative acetate kinase; COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain.
 
    0.967
SRA_03466
Oxidoreductase, putative; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
  
 0.556
SRA_05206
Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
 
 0.414
SRA_04916
COG2188 Transcriptional regulators.
  
    0.412
TreR
Repressor of the trehalose operon; COG2188 Transcriptional regulators.
  
    0.412
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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