STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SufBHypothetical protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (460 aa)    
Predicted Functional Partners:
SufC
Putative ABC transporter, ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 0.962
SRA_09738
Hypothetical protein; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.884
SufD
Putative ABC transporter, membrane protein; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
  
0.637
SRA_09733
Putative nitrogen fixation-like protein, NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
 
  
 0.629
SRA_03521
Hypothetical protein.
       0.519
SRA_03511
COG0716 Flavodoxins.
     
 0.470
SRA_03526
Hypothetical protein; COG1605 Chorismate mutase.
       0.426
SRA_03531
COG0038 Chloride channel protein EriC.
       0.426
Your Current Organism:
Streptococcus ratti
NCBI taxonomy Id: 699248
Other names: S. ratti FA-1 = DSM 20564, Streptococcus ratti DSM 20564, Streptococcus ratti DSM 20564 = FA-1, Streptococcus ratti FA-1, Streptococcus ratti FA-1 = DSM 20564
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.